sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1uom | PTI | Estrogen receptor |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1uom | PTI | Estrogen receptor | / | 1.456 | |
| 2ouz | C3D | Estrogen receptor | / | 1.039 | |
| 1xqc | AEJ | Estrogen receptor | / | 0.970 | |
| 1yin | CM3 | Estrogen receptor | / | 0.887 | |
| 1yim | CM4 | Estrogen receptor | / | 0.858 | |
| 1sj0 | E4D | Estrogen receptor | / | 0.839 | |
| 3ert | OHT | Estrogen receptor | / | 0.826 | |
| 2bj4 | OHT | Estrogen receptor | / | 0.820 | |
| 1xp1 | AIH | Estrogen receptor | / | 0.815 | |
| 1err | RAL | Estrogen receptor | / | 0.794 | |
| 1xpc | AIT | Estrogen receptor | / | 0.791 | |
| 4iv4 | 1GS | Estrogen receptor | / | 0.778 | |
| 2ayr | L4G | Estrogen receptor | / | 0.764 | |
| 2qe4 | JJ3 | Estrogen receptor | / | 0.756 | |
| 1xp9 | AIJ | Estrogen receptor | / | 0.745 | |
| 4iw6 | 1GU | Estrogen receptor | / | 0.730 | |
| 2fsz | OHT | Estrogen receptor beta | / | 0.710 | |
| 4iu7 | 1GM | Estrogen receptor | / | 0.709 | |
| 1xp6 | AIU | Estrogen receptor | / | 0.698 | |
| 2ewp | TXF | Estrogen-related receptor gamma | / | 0.687 | |
| 2gpu | OHT | Estrogen-related receptor gamma | / | 0.687 | |
| 2jfa | RAL | Estrogen receptor | / | 0.683 | |
| 2jf9 | OHT | Estrogen receptor | / | 0.675 | |
| 1s9q | OHT | Estrogen-related receptor gamma | / | 0.672 | |
| 2fai | 459 | Estrogen receptor | / | 0.669 | |
| 3erd | DES | Estrogen receptor | / | 0.666 | |
| 4e5f | 0N7 | Polymerase acidic protein | / | 0.664 | |
| 2p7z | OHT | Estrogen-related receptor gamma | / | 0.661 | |
| 1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.660 | |
| 4e5i | 0N9 | Polymerase acidic protein | / | 0.660 | |
| 3uud | EST | Estrogen receptor | / | 0.657 | |
| 5hyr | EST | Estrogen receptor | / | 0.657 | |
| 4e5l | DBH | Polymerase acidic protein | / | 0.654 | |
| 1c2t | NHS | Phosphoribosylglycinamide formyltransferase | / | 0.653 | |
| 2iog | IOG | Estrogen receptor | / | 0.651 | |
| 2pog | WST | Estrogen receptor | / | 0.650 |