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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uda UFG UDP-glucose 4-epimerase 5.1.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 1.200
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 1.068
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 1.044
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 1.012
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 1.009
1ek6 UPGUDP-glucose 4-epimerase / 1.006
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.959
1i3m UD1UDP-glucose 4-epimerase / 0.958
1i3n UD1UDP-glucose 4-epimerase / 0.952
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.952
1i3k UPGUDP-glucose 4-epimerase / 0.946
1i3l GDUUDP-glucose 4-epimerase / 0.941
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.929
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.928
3enk UPGUDP-glucose 4-epimerase / 0.923
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.887
4zrn UPGUDP-glucose 4-epimerase, putative / 0.829
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.818
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.759
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.755
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.737
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.729
1hzj UD1UDP-glucose 4-epimerase / 0.704
1sb8 UD2WbpP / 0.697
4p5a FADFlavin-dependent thymidylate synthase / 0.684
4gtl FADFlavin-dependent thymidylate synthase 2.1.1.148 0.677
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.673
4jla ADPAdenylate kinase / 0.673
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.667
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.662
3aez GDPPantothenate kinase 2.7.1.33 0.655
1sb9 UPGWbpP / 0.654