Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uak SAM tRNA (guanine-N(1)-)-methyltransferase 2.1.1.228

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uak SAMtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.860
4yvg SAMtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.769
1ual SAHtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.756
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.685
4yvh SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.669
4ig6 SAHtRNA (guanine-N(1)-)-methyltransferase / 0.659
1p9p SAHtRNA (guanine-N(1)-)-methyltransferase / 0.652