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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u6q 745 Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.869
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.804
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.797
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.793
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.787
3v0x ANHCationic trypsin 3.4.21.4 0.775
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.772
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.771
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.771
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.770
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.767
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.752
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.746
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.733
1wqv PSMCoagulation factor VII 3.4.21.21 0.703
1ghv 120Prothrombin 3.4.21.5 0.696
2znk 31UProthrombin 3.4.21.5 0.694
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.691
1zsk 421Coagulation factor XI 3.4.21.27 0.681
2zp0 PI0Coagulation factor VII 3.4.21.21 0.672
4baq M4ZProthrombin 3.4.21.5 0.671
2a2x NA9Prothrombin 3.4.21.5 0.665
1drt PCVClavaminate synthase 1 1.14.11.21 0.660
1c1w BAHProthrombin 3.4.21.5 0.658
3ig6 438Urokinase-type plasminogen activator 3.4.21.73 0.658
1ejn AGBUrokinase-type plasminogen activator 3.4.21.73 0.653
4b05 32DBeta-secretase 1 3.4.23.46 0.650