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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u5c BIK L-lactate dehydrogenase 1.1.1.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u5c BIKL-lactate dehydrogenase 1.1.1.27 0.790
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.747
3fvu IACKynurenine--oxoglutarate transaminase 1 2.6.1.7 0.684
1drt PCVClavaminate synthase 1 1.14.11.21 0.670
3ipk PMSSurface protein adhesin / 0.664
4i3p 1CW3-hydroxyanthranilate 3,4-dioxygenase / 0.659
2ch2 KY1Serine--pyruvate aminotransferase / 0.658
3cd2 MTXDihydrofolate reductase 1.5.1.3 0.654
4ej1 FOLDihydrofolate reductase 1.5.1.3 0.652
4j36 1HRKynurenine 3-monooxygenase / 0.652