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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u2d NAD NAD(P) transhydrogenase subunit alpha part 1 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u2d NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.989
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.754
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.745
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.719
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.708
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.702
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.700
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.698
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.672
2fr8 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.668
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.664
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.660