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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ty8 ADP Probable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ty8 ADPProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.909
1txz APRProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.805
3q71 AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.697
3iif APRCore histone macro-H2A.1 / 0.696
3iid APRCore histone macro-H2A.1 / 0.695
4abk AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.684
3gqo APRNon-structural polyprotein / 0.679
3v2b AR6Poly [ADP-ribose] polymerase 15 2.4.2.30 0.677
4wec NADShort chain dehydrogenase / 0.661
4nec SAHPutative SAM-dependent methyltransferase / 0.660
1boo SAHModification methylase PvuII 2.1.1.113 0.654
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.651
4x7y SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.651