sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1tu3 | GNP | Ras-related protein Rab-5A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.297 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.151 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.147 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.112 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.104 | |
| 4g0n | GNP | GTPase HRas | / | 1.092 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.091 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.087 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.079 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.078 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.072 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.068 | |
| 4dlv | GNP | GTPase HRas | / | 1.063 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.061 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.056 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.055 | |
| 3lbh | GNP | GTPase HRas | / | 1.052 | |
| 3rs0 | GNP | GTPase HRas | / | 1.050 | |
| 3rs4 | GNP | GTPase HRas | / | 1.050 | |
| 3rs7 | GNP | GTPase HRas | / | 1.048 | |
| 4dlx | GNP | GTPase HRas | / | 1.047 | |
| 5b2z | GNP | GTPase HRas | / | 1.046 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.044 | |
| 3l8y | GNP | GTPase HRas | / | 1.040 | |
| 3rs5 | GNP | GTPase HRas | / | 1.034 | |
| 4dls | GNP | GTPase HRas | / | 1.033 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.030 | |
| 3ddc | GNP | GTPase HRas | / | 1.030 | |
| 3v4f | GNP | GTPase HRas | / | 1.029 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.028 | |
| 3k8y | GNP | GTPase HRas | / | 1.020 | |
| 4dlt | GNP | GTPase HRas | / | 1.020 | |
| 2c5l | GTP | GTPase HRas | / | 1.018 | |
| 2rge | GNP | GTPase HRas | / | 1.018 | |
| 4l9w | GNP | GTPase HRas | / | 1.018 | |
| 3lbi | GNP | GTPase HRas | / | 1.017 | |
| 3lbn | GNP | GTPase HRas | / | 1.017 | |
| 4k81 | GTP | GTPase HRas | / | 1.017 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.016 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.015 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.015 | |
| 2rgb | GNP | GTPase HRas | / | 1.012 | |
| 4nyj | GNP | GTPase HRas | / | 1.010 | |
| 4dso | GSP | GTPase KRas | / | 1.009 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.006 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 1.005 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.004 | |
| 4dlz | GNP | GTPase HRas | / | 1.004 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.001 | |
| 3oiu | GNP | GTPase HRas | / | 1.001 | |
| 4dlw | GNP | GTPase HRas | / | 0.999 | |
| 4xvq | GNP | GTPase HRas | / | 0.995 | |
| 3oiv | GNP | GTPase HRas | / | 0.994 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.993 | |
| 3i3s | GNP | GTPase HRas | / | 0.992 | |
| 4nyi | GNP | GTPase HRas | / | 0.991 | |
| 2rgc | GNP | GTPase HRas | / | 0.990 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.989 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.988 | |
| 3rsl | GNP | GTPase HRas | / | 0.988 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.986 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.986 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.984 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.983 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.983 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.982 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.982 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.982 | |
| 4dsn | GCP | GTPase KRas | / | 0.982 | |
| 3k9l | GNP | GTPase HRas | / | 0.980 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.979 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.977 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.976 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.971 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.970 | |
| 2rgg | GNP | GTPase HRas | / | 0.965 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.961 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.961 | |
| 3oiw | GNP | GTPase HRas | / | 0.959 | |
| 4q02 | GDP | GTPase KRas | / | 0.958 | |
| 4lv6 | GDP | GTPase KRas | / | 0.957 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.957 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.956 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.955 | |
| 3tgp | GNP | GTPase HRas | / | 0.954 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.950 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.945 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.944 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.944 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.943 | |
| 4wa7 | GDP | GTPase KRas | / | 0.941 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.940 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.939 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.939 | |
| 4tq9 | GDP | GTPase KRas | / | 0.938 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.938 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.937 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.937 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.936 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.936 | |
| 4ql3 | GDP | GTPase KRas | / | 0.935 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.935 | |
| 4dsu | GDP | GTPase KRas | / | 0.932 | |
| 4dvg | GSP | Rho family GTPase | / | 0.932 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.932 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.931 | |
| 2ce2 | GDP | GTPase HRas | / | 0.930 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.927 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.927 | |
| 4q03 | GDP | GTPase KRas | / | 0.925 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.922 | |
| 4l9s | GDP | GTPase HRas | / | 0.922 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.921 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.920 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.920 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.920 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.919 | |
| 4epx | GDP | GTPase KRas | / | 0.919 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.917 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.916 | |
| 2cl6 | CAG | GTPase HRas | / | 0.915 | |
| 1lfd | GNP | GTPase HRas | / | 0.912 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.912 | |
| 4lpk | GDP | GTPase KRas | / | 0.908 | |
| 3r9x | GNP | GTPase Era | / | 0.907 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.905 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.905 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.904 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.904 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.903 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.902 | |
| 4l8g | GDP | GTPase KRas | / | 0.902 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.901 | |
| 4lrw | GDP | GTPase KRas | / | 0.900 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.896 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.896 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.895 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.894 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.894 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.892 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.892 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.890 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.889 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.886 | |
| 4obe | GDP | GTPase KRas | / | 0.885 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.884 | |
| 3ftq | GNP | Septin-2 | / | 0.883 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.881 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.878 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.878 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.878 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.877 | |
| 4epw | GDP | GTPase KRas | / | 0.877 | |
| 4luc | GDP | GTPase KRas | / | 0.877 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.875 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.872 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.872 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.870 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.866 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.865 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.861 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.861 | |
| 4mit | GTP | Rho-related protein racC | / | 0.858 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.856 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.856 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.855 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.854 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.853 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.852 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.850 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.848 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.847 | |
| 3ref | GDP | Rho family GTPase | / | 0.846 | |
| 3kud | GDP | GTPase HRas | / | 0.844 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.843 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.843 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.841 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.841 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.840 | |
| 4xvr | GNP | GTPase HRas | / | 0.837 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.836 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.835 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.835 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.835 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.832 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.831 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.830 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.828 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.827 | |
| 4ldj | GDP | GTPase KRas | / | 0.827 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.826 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.825 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.825 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.824 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.823 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.823 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.823 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.823 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.820 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.817 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.817 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.817 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.814 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.813 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.812 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.811 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.811 | |
| 4yqf | GDP | Septin-9 | / | 0.810 | |
| 2fna | ADP | Uncharacterized protein | / | 0.808 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.807 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.805 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.804 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.804 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.804 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.804 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.802 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.802 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.800 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.799 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.799 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.797 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.796 | |
| 4db1 | ANP | Myosin-7 | / | 0.795 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.795 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.794 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.794 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.793 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.792 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.792 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.791 | |
| 4c2u | ANP | DNA helicase | / | 0.791 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.790 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.790 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.789 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.789 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.789 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.787 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.786 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.786 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.786 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.783 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.782 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.782 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.782 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.781 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.780 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.780 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.779 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.778 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.778 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.777 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.774 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.773 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.772 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.771 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.771 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.771 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.769 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.769 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.768 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.767 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.767 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.765 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.763 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.762 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.761 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.760 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.758 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.758 | |
| 2zts | ADP | Uncharacterized protein | / | 0.758 | |
| 1ank | ANP | Adenylate kinase | / | 0.757 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.756 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.756 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.756 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.755 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.754 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.753 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.752 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.751 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.751 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.751 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.751 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.750 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.750 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.749 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.749 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.749 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.748 | |
| 5cyo | GDP | Septin-9 | / | 0.748 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.747 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.747 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.747 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.746 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.745 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.745 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.745 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.744 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.744 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.743 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.743 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.743 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.743 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.743 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.742 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.742 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.742 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.742 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.741 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.741 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.741 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.741 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.740 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.740 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.740 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.740 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.740 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.740 | |
| 4v02 | ATP | Site-determining protein | / | 0.739 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.738 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.738 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.737 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.737 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.737 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.736 | |
| 5ftc | ADP | TPR domain protein | / | 0.736 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.735 | |
| 4ike | ADP | Adenylate kinase | / | 0.735 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.734 | |
| 4jld | ADP | Adenylate kinase | / | 0.734 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 2zr9 | DTP | Protein RecA | / | 0.732 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.730 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.730 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.729 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.729 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.729 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.728 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.727 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.727 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.726 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.723 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.723 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.722 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.721 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.720 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.720 | |
| 5dac | AGS | Uncharacterized protein | / | 0.720 | |
| 2eck | ADP | Adenylate kinase | / | 0.719 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.718 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.718 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 4jky | ADP | Adenylate kinase | / | 0.718 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.717 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.716 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.716 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.714 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.714 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.714 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.714 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.713 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.713 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.713 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.713 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.713 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.712 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.712 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.712 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.712 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.711 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.711 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.711 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.711 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.710 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.709 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.708 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.707 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.706 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.704 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.704 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.704 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.704 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.704 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.704 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.704 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.700 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.700 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.700 | |
| 1xmv | ADP | Protein RecA | / | 0.699 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.699 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.698 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.698 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.697 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.694 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.694 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.693 | |
| 5cyp | GSP | Septin-9 | / | 0.693 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.692 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.691 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.691 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.691 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.691 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.691 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.690 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.690 | |
| 1xms | ANP | Protein RecA | / | 0.689 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.686 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.686 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.684 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.684 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.682 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.681 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.680 | |
| 1kqm | ANP | Myosin heavy chain, striated muscle | / | 0.679 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.679 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.679 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.679 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.678 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.678 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.678 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.676 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.676 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.676 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.676 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.675 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.673 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.672 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.672 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.671 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.671 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.671 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.670 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.669 | |
| 1ake | AP5 | Adenylate kinase | / | 0.668 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.668 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.667 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.667 | |
| 4bub | ADP | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase | / | 0.667 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.667 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.667 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.667 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.665 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.665 | |
| 1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.665 | |
| 1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.665 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.665 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.665 | |
| 4bn1 | ADP | Aurora kinase A | 2.7.11.1 | 0.665 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.664 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.664 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.664 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.664 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.663 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.663 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.663 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.663 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.662 | |
| 3l1c | ADP | Protein claret segregational | / | 0.662 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.661 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.660 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.660 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.659 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.658 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.657 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.656 | |
| 2zev | B71 | Geranylgeranyl pyrophosphate synthase | / | 0.655 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.655 | |
| 3ncr | ADP | Nitrogen regulatory protein P-II (GlnB-2) | / | 0.655 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.654 | |
| 3aez | GDP | Pantothenate kinase | 2.7.1.33 | 0.654 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.654 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.653 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.653 | |
| 5ftf | ADP | TPR domain protein | / | 0.653 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.652 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.652 | |
| 2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.652 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.651 | |
| 5i4n | ATP | Tyrosine-protein kinase JAK2 | / | 0.651 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.650 | |
| 5iqi | GNP | Bifunctional AAC/APH | 2.3.1 | 0.650 |