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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1toi HCI Aspartate aminotransferase 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1toi HCIAspartate aminotransferase 2.6.1.1 0.863
1toj HCIAspartate aminotransferase 2.6.1.1 0.795
2ay2 CXPAromatic-amino-acid aminotransferase 2.6.1.57 0.710
2c3d COM2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.684
2ay5 IOPAromatic-amino-acid aminotransferase 2.6.1.57 0.679
4x5g FOLDihydrofolate reductase 1.5.1.3 0.678
1d3g BREDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.677
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.677
3kkz SAMUncharacterized protein / 0.676
2r2n KYNKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.671
2rds 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 0.671
5ej8 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.669
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.667
3aej AA5Methionine gamma-lyase / 0.665
1rx4 DDFDihydrofolate reductase 1.5.1.3 0.664
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.664
2prh 238Dihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.663
1hfq MOTDihydrofolate reductase 1.5.1.3 0.662
5iot UMPFlavin-dependent thymidylate synthase 2.1.1.148 0.662
3zzh NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.660
1rx8 FOLDihydrofolate reductase 1.5.1.3 0.659
3h06 VBPGlutamate receptor 2 / 0.658
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.655
3q8x UD1Toxin zeta / 0.655
4i1n FOLDihydrofolate reductase 1.5.1.3 0.655
4fhb FOLDihydrofolate reductase 1.5.1.3 0.654
4i56 1CZ3-hydroxy-3-methylglutaryl-coenzyme A reductase 1.1.1.88 0.654
1fro GSBLactoylglutathione lyase 4.4.1.5 0.653
1qip GNBLactoylglutathione lyase 4.4.1.5 0.653
4m6k FOLDihydrofolate reductase 1.5.1.3 0.653
1asc NPLAspartate aminotransferase 2.6.1.1 0.652
3dds 26BGlycogen phosphorylase, liver form 2.4.1.1 0.652
4kww PHTNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.652
1dhf FOLDihydrofolate reductase 1.5.1.3 0.651
3dau MTXDihydrofolate reductase 1.5.1.3 0.650
4bqs K2QShikimate kinase 2.7.1.71 0.650
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.650
6req 3CPMethylmalonyl-CoA mutase large subunit 5.4.99.2 0.650