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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tj1 FAD Bifunctional protein PutA 1.5.5.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1tj1 FADBifunctional protein PutA 1.5.5.2 1.612
2fzn FADBifunctional protein PutA 1.5.5.2 1.601
1tj0 FADBifunctional protein PutA 1.5.5.2 1.583
1tj2 FADBifunctional protein PutA 1.5.5.2 1.565
4o8a FADBifunctional protein PutA 1.2.1.88 1.530
2fzm FADBifunctional protein PutA 1.5.5.2 1.420
4nmb FADBifunctional protein PutA / 1.361
4nm9 FADBifunctional protein PutA / 1.338
4q73 FADBifunctional protein PutA / 1.304
3e2s FADBifunctional protein PutA 1.5.5.2 1.285
4q72 FADBifunctional protein PutA / 1.283
3haz FADBifunctional protein PutA / 1.273
4q71 FADBifunctional protein PutA / 1.231
4nmd FDABifunctional protein PutA / 1.135
4nmc FADBifunctional protein PutA / 0.974
1cqx FADFlavohemoprotein / 0.697
3d72 FADVivid PAS protein VVD / 0.695
3gfz FMNUncharacterized protein / 0.686
1r2j FADFkbI / 0.685
3sfd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.684
5ebu FMNLactate oxidase / 0.680
1kf6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.679
2eix FADNADH-cytochrome b5 reductase / 0.679
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.678
3gfy FMNUncharacterized protein / 0.674
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.673
1gvh FADFlavohemoprotein / 0.671
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.668
1lfd GNPGTPase HRas / 0.667
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.666
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.660
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.659
4idp GNPAtlastin-1 3.6.5 0.655
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.654
3of4 FMNNitroreductase / 0.652