Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tj0 FAD Bifunctional protein PutA 1.5.5.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1tj0 FADBifunctional protein PutA 1.5.5.2 1.641
2fzn FADBifunctional protein PutA 1.5.5.2 1.611
1tj2 FADBifunctional protein PutA 1.5.5.2 1.600
1tj1 FADBifunctional protein PutA 1.5.5.2 1.583
4o8a FADBifunctional protein PutA 1.2.1.88 1.529
4nmb FADBifunctional protein PutA / 1.357
4nm9 FADBifunctional protein PutA / 1.342
2fzm FADBifunctional protein PutA 1.5.5.2 1.306
3e2s FADBifunctional protein PutA 1.5.5.2 1.265
4q72 FADBifunctional protein PutA / 1.260
4q73 FADBifunctional protein PutA / 1.250
4q71 FADBifunctional protein PutA / 1.224
3haz FADBifunctional protein PutA / 1.176
4nmd FDABifunctional protein PutA / 1.064
4nmc FADBifunctional protein PutA / 0.865
4h6r FDAProline dehydrogenase / 0.802
5hxw FADL-amino acid deaminase / 0.696
3gfy FMNUncharacterized protein / 0.690
3aty FMNProstaglandin F2a synthase / 0.676
1wsb FMNFlavodoxin / 0.675
3tjl FMNNADPH dehydrogenase / 0.670
4z24 FADPutative GMC-type oxidoreductase R135 1 0.665
4uth FMNXenobiotic reductase / 0.664
1kf6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.658
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.658
2rgg GNPGTPase HRas / 0.657
4x9n FADUncharacterized protein MG039 homolog / 0.657
3n14 FMNXenobiotic reductase / 0.656
1tdo FADL-amino-acid oxidase 1.4.3.2 0.655
3ad9 FADSubunit beta of sarcosine oxidase / 0.655
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655
4ytn FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.655
2cdu FADNADH oxidase / 0.654
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.653
2vxa RBFDodecin / 0.652
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.651
5j60 FADThioredoxin reductase / 0.650