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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tf7 ATP Circadian clock protein kinase KaiC 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1tf7 ATPCircadian clock protein kinase KaiC 2.7.11.1 1.132
1u9i ATPCircadian clock protein kinase KaiC 2.7.11.1 1.132
3dvl ATPCircadian clock protein kinase KaiC 2.7.11.1 1.068
3k0f ATPCircadian clock protein kinase KaiC 2.7.11.1 1.057
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.997
3s1a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.926
3jzm ATPCircadian clock protein kinase KaiC 2.7.11.1 0.867
4tl7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.715
4tl6 ANPCircadian clock protein kinase KaiC 2.7.11.1 0.704
4tl9 AGSCircadian clock protein kinase KaiC 2.7.11.1 0.697
4o0m ATPCircadian clock protein kinase KaiC 2.7.11.1 0.696
4tla ADPCircadian clock protein kinase KaiC 2.7.11.1 0.695
4tl8 AGSCircadian clock protein kinase KaiC 2.7.11.1 0.685
3k0a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.683
4tle AGSCircadian clock protein kinase KaiC 2.7.11.1 0.680
4tlb AGSCircadian clock protein kinase KaiC 2.7.11.1 0.677
4tlc AGSCircadian clock protein kinase KaiC 2.7.11.1 0.677
2osb AP5Adenylate kinase / 0.663
3aq0 ISYSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial 2.5.1.85 0.656
4mkf AP5Adenylate kinase / 0.654
2dr3 ADPUPF0273 protein PH0284 / 0.653