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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t2a GDP GDP-mannose 4,6 dehydratase 4.2.1.47

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t2a GDPGDP-mannose 4,6 dehydratase 4.2.1.47 1.148
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 1.082
2z1m GDPGDP-mannose 4,6-dehydratase / 0.916
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.711
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.710
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.705
4zrn UPGUDP-glucose 4-epimerase, putative / 0.701
1sb8 UD2WbpP / 0.680
1sb9 UPGWbpP / 0.678
3q2k NAIProbable oxidoreductase / 0.673
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.671
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.671
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.656
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.656
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.653
1g1a NADdTDP-glucose 4,6-dehydratase / 0.652
4pxz CLRP2Y purinoceptor 12 / 0.651
1z0d GDPRas-related protein Rab-5C / 0.650