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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t0i FMN NAD(P)H-dependent FMN reductase LOT6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t0i FMNNAD(P)H-dependent FMN reductase LOT6 / 1.262
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.727
4h6p FMNChromate reductase / 0.711
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.707
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.697
4hs4 FMNChromate reductase / 0.688
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.687
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.681
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.681
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.679
2z6i FMN2-nitropropane dioxygenase / 0.673
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.669
2b3d FADModulator of drug activity B / 0.668
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.668
2wzv FMNNitroreductase NfnB / 0.664
2wzw FMNNitroreductase NfnB / 0.664
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.662
1amo FMNNADPH--cytochrome P450 reductase / 0.661
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.659
4z38 FMNMlnA / 0.658
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.657
3rpe FADPutative modulator of drug activity / 0.657
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.656
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.653
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.652