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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1szm BI4 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1szm BI4cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.064
1zrz BI1Protein kinase C iota type 2.7.11.13 0.727
2i0e PDSProtein kinase C beta type 2.7.11.13 0.712
1uvr BI83-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.709
2bik BI1Serine/threonine-protein kinase pim-1 2.7.11.1 0.704
1uu7 BI23-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.677
1xws BI1Serine/threonine-protein kinase pim-1 2.7.11.1 0.676
3otu BI43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.672
2bil BI1Serine/threonine-protein kinase pim-1 2.7.11.1 0.670
3orz BI43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.669
1uu9 BI33-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.666