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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1szg FNS Cytochrome b2, mitochondrial 1.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 1.335
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.960
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.948
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.926
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.922
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.908
2zfa FMNLactate oxidase / 0.772
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.761
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.750
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.742
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.741
3p82 FMNPentaerythritol tetranitrate reductase / 0.737
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.736
2e77 FMNLactate oxidase / 0.725
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.708
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.706
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.698
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.696
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.695
2du2 FMNLactate oxidase / 0.691
4yl2 FMNLactate oxidase / 0.690
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.688
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.686
3p62 FMNPentaerythritol tetranitrate reductase / 0.685
4rje FNRLactate oxidase / 0.685
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.682
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.682
4utk FNRXenobiotic reductase / 0.679
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.677
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.676
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.669
2h8x FMNXenA / 0.669
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.668
3l5l FMNXenobiotic reductase / 0.668
1h63 FMNPentaerythritol tetranitrate reductase / 0.665
3gka FMNN-ethylmaleimide reductase / 0.665
2nli FMNLactate oxidase / 0.662
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.661
4dpd UMPBifunctional dihydrofolate reductase-thymidylate synthase / 0.661
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.658
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.657
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.657
3n14 FMNXenobiotic reductase / 0.657
4e2d FMNDehydrogenase / 0.656
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.655
4utl FNRXenobiotic reductase / 0.654
1khe GCPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.651
3n19 FNRXenobiotic reductase / 0.650
3p84 FMNPentaerythritol tetranitrate reductase / 0.650
4utm FNRXenobiotic reductase / 0.650