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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1szc CNA NAD-dependent protein deacetylase HST2 3.5.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1szc CNANAD-dependent protein deacetylase HST2 3.5.1 1.175
2qqf A1RNAD-dependent protein deacetylase HST2 3.5.1 0.775
3d4b DZDNAD-dependent protein deacetylase / 0.761
5d7q AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.742
2h59 APRNAD-dependent protein deacetylase / 0.734
5d7o AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.734
4zzj CNANAD-dependent protein deacetylase sirtuin-1 3.5.1 0.703
4bvb AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.700
2h59 3ODNAD-dependent protein deacetylase / 0.697
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.687
4g1c CNANAD-dependent protein deacylase sirtuin-5, mitochondrial / 0.686
5d7p AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.684