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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1swt BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1swt BTNStreptavidin / 1.015
1swe BTNStreptavidin / 0.938
1n9m BTNStreptavidin / 0.909
2izf BTNStreptavidin / 0.907
1n43 BTNStreptavidin / 0.892
2rte BTNStreptavidin / 0.890
1nc9 IMIStreptavidin / 0.886
2rtd BTNStreptavidin / 0.886
1nqm BTNStreptavidin / 0.885
2rtg BTNStreptavidin / 0.885
2y3f BTNStreptavidin / 0.885
1i9h BNIStreptavidin / 0.883
2izl IMIStreptavidin / 0.880
2izh BTNStreptavidin / 0.873
3ry2 BTNStreptavidin / 0.873
4gda BTNStreptavidin / 0.872
1mk5 BTNStreptavidin / 0.870
3wyp BSOStreptavidin / 0.870
3wyq BTNStreptavidin / 0.869
2rtf BTNStreptavidin / 0.868
1swn BTNStreptavidin / 0.867
2izj BTNStreptavidin / 0.862
4gd9 BTNStreptavidin / 0.860
1df8 BTNStreptavidin / 0.859
2izi BTNStreptavidin / 0.851
4dne DTBStreptavidin / 0.851
1luq BTNStreptavidin / 0.850
1stp BTNStreptavidin / 0.844
2rtr IMIStreptavidin / 0.844
2izg BTNStreptavidin / 0.840
2zsc BTNTamavidin2 / 0.839
4bx7 B4FStreptavidin / 0.835
3wzn BTNStreptavidin / 0.828
4yvb BTNStreptavidin / 0.828
1lcw SHMStreptavidin / 0.825
4z28 BTNHoefavidin / 0.823
1swg BTNStreptavidin / 0.822
1ndj BTNStreptavidin / 0.821
3rdo BTNStreptavidin / 0.821
2rto IMIStreptavidin / 0.820
1mep BTNStreptavidin / 0.813
2rtp IMIStreptavidin / 0.807
1lcz BH7Streptavidin / 0.804
1rxj BNIStreptavidin / 0.797
2c4i BTNAvidin / 0.792
1y52 BTNAvidin-related protein 4/5 / 0.790
2fhn BNIAvidin-related protein 4/5 / 0.787
4bcs BTNAvidin-related protein 4/5 / 0.787
3rdq DTBStreptavidin / 0.784
2uyw BTNAvd protein / 0.778
2fhl BNIAvidin-related protein 4/5 / 0.774
2rtm IMIStreptavidin / 0.766
2rtn IMIStreptavidin / 0.766
2rtq IMIStreptavidin / 0.766
4bj8 BTNAvidin / 0.748
3t2w BTNAvidin/streptavidin / 0.747
3vgw NVZAvidin / 0.744
3vhi VHIAvidin / 0.738
1swp BTNStreptavidin / 0.736
1swr BTNStreptavidin / 0.735
3ew2 BTNHypothetical conserved protein / 0.724
4ggz BTNBll1558 protein / 0.720
2rtl IMIStreptavidin / 0.710
1rxh BNIStreptavidin / 0.685
3vhh VHHAvidin / 0.679
1avd BTNAvidin / 0.664
1swd BTNStreptavidin / 0.662
1ij8 BNIAvidin / 0.656