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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1swg BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1swg BTNStreptavidin / 0.970
1n9m BTNStreptavidin / 0.938
4gd9 BTNStreptavidin / 0.928
2zsc BTNTamavidin2 / 0.925
3wyp BSOStreptavidin / 0.924
3wyq BTNStreptavidin / 0.922
3ry2 BTNStreptavidin / 0.920
1mk5 BTNStreptavidin / 0.916
1swe BTNStreptavidin / 0.915
2y3f BTNStreptavidin / 0.911
4gda BTNStreptavidin / 0.908
2izh BTNStreptavidin / 0.907
1luq BTNStreptavidin / 0.903
1rxj BNIStreptavidin / 0.901
1df8 BTNStreptavidin / 0.900
2izi BTNStreptavidin / 0.899
2rtg BTNStreptavidin / 0.898
2izf BTNStreptavidin / 0.892
2rtf BTNStreptavidin / 0.881
2rtd BTNStreptavidin / 0.880
3wzn BTNStreptavidin / 0.879
4yvb BTNStreptavidin / 0.879
1stp BTNStreptavidin / 0.878
1n43 BTNStreptavidin / 0.868
2rte BTNStreptavidin / 0.868
4z28 BTNHoefavidin / 0.867
1ndj BTNStreptavidin / 0.864
2izj BTNStreptavidin / 0.864
4dne DTBStreptavidin / 0.862
1i9h BNIStreptavidin / 0.860
1lcw SHMStreptavidin / 0.857
1swr BTNStreptavidin / 0.845
2izg BTNStreptavidin / 0.840
4bx7 B4FStreptavidin / 0.838
3rdo BTNStreptavidin / 0.826
3t2w BTNAvidin/streptavidin / 0.823
1swt BTNStreptavidin / 0.822
1rxh BNIStreptavidin / 0.819
2rtm IMIStreptavidin / 0.819
2rtr IMIStreptavidin / 0.819
2uyw BTNAvd protein / 0.816
1mep BTNStreptavidin / 0.810
1lcz BH7Streptavidin / 0.807
1nqm BTNStreptavidin / 0.806
2rtq IMIStreptavidin / 0.800
1swn BTNStreptavidin / 0.799
2c4i BTNAvidin / 0.796
1swd BTNStreptavidin / 0.795
2izl IMIStreptavidin / 0.794
3ew2 BTNHypothetical conserved protein / 0.785
2rtp IMIStreptavidin / 0.782
1y52 BTNAvidin-related protein 4/5 / 0.779
1swp BTNStreptavidin / 0.774
4bcs BTNAvidin-related protein 4/5 / 0.762
3rdq DTBStreptavidin / 0.757
1swp BTQStreptavidin / 0.754
2rto IMIStreptavidin / 0.750
2fhl BNIAvidin-related protein 4/5 / 0.747
2fhn BNIAvidin-related protein 4/5 / 0.745
4bj8 BTNAvidin / 0.740
2rtl IMIStreptavidin / 0.733
1nc9 IMIStreptavidin / 0.732
2jgs BTNAvidin / 0.721
4ggz BTNBll1558 protein / 0.719
1avd BTNAvidin / 0.718
2rtn IMIStreptavidin / 0.676
4dve BTNBiotin transporter BioY / 0.669
2avi BTNAvidin / 0.650