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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1svh I08 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.387
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.036
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.979
1svg I04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.952
1xh9 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.911
1xh4 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.903
1xh7 R96cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.875
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.872
1xha R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.870
1veb I05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.865
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.797
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.752
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.746
1ydt IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.726
2c1a I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.689
1q8t Y27cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
3vqh IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.681
2x6d X6DAurora kinase A 2.7.11.1 0.664
2c1b CQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
2vo0 M03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654