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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ss9 UPF LgtC

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ss9 UPFLgtC / 1.302
1g9r UPFLgtC / 1.066
1ga8 UPFLgtC / 1.023
1zdf UPGGlycogenin-1 2.4.1.186 0.735
3v0m 5GWHisto-blood group ABO system transferase / 0.732
3v0o 4GWHisto-blood group ABO system transferase / 0.732
5c3b URMHisto-blood group ABO system transferase / 0.728
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.724
3t7o UPGGlycogenin-1 2.4.1.186 0.712
4kc2 WS2Histo-blood group ABO system transferase / 0.706
4kc1 WS1Histo-blood group ABO system transferase / 0.704
4kc4 WS3Histo-blood group ABO system transferase / 0.704
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.698
3v0n 4GWHisto-blood group ABO system transferase / 0.690
5c4f UPGHisto-blood group ABO system transferase / 0.686
5c1g GDUHisto-blood group ABO system transferase / 0.685
3wyg GTPGTP-binding nuclear protein GSP1/CNR1 / 0.680
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.679
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.679
3rmw UPGGlycogenin-1 2.4.1.186 0.679
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.679
4dls GNPGTPase HRas / 0.677
5iqb GNPBifunctional AAC/APH 2.3.1 0.677
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.669
5c8r UPGHisto-blood group ABO system transferase / 0.668
2rgg GNPGTPase HRas / 0.666
1ky2 GNPGTP-binding protein YPT7 / 0.665
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.664
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.664
2qtv GNPSmall COPII coat GTPase SAR1 3.6.5 0.663
3hav ATPAminoglycoside phosphotransferase / 0.662
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.662
3i5x ANPATP-dependent RNA helicase MSS116, mitochondrial 3.6.4.13 0.660
3srz UPGToxin A / 0.660
5c4b UPGHisto-blood group ABO system transferase / 0.659
3c4z ADPRhodopsin kinase / 0.658
1zdg UPGGlycogenin-1 2.4.1.186 0.657
5iqh GNPBifunctional AAC/APH 2.3.1 0.657
2vp0 TTPDeoxynucleoside kinase / 0.655
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.655
3myk ANPMyosin-2 heavy chain / 0.654
3t9a ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.654
3tgp GNPGTPase HRas / 0.654
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.654
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.654
5c4c UPGHisto-blood group ABO system transferase / 0.653
5byl GCPBifunctional AAC/APH 2.3.1 0.652
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
5jlj GNPGTP-binding nuclear protein Ran / 0.651
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.650
2bme GNPRas-related protein Rab-4A / 0.650
2qo7 ANPEphrin type-A receptor 3 2.7.10.1 0.650
3qc9 ADPRhodopsin kinase / 0.650
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650