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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sqt UI3 Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.953
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.899
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.843
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.806
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.802
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.792
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.791
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.791
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.787
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.786
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4baq M4ZProthrombin 3.4.21.5 0.742
3v0x ANHCationic trypsin 3.4.21.4 0.731
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.723
4e7r 0NWProthrombin 3.4.21.5 0.720
3biv 11UProthrombin 3.4.21.5 0.711
1ghv 120Prothrombin 3.4.21.5 0.704
2zfq 45UProthrombin 3.4.21.5 0.699
2ziq 26UProthrombin 3.4.21.5 0.699
4bao MVFProthrombin 3.4.21.5 0.699
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.691
2zhw 12UProthrombin 3.4.21.5 0.691
3ig6 438Urokinase-type plasminogen activator 3.4.21.73 0.688
1o5g CR9Prothrombin 3.4.21.5 0.683
1ype UIPProthrombin 3.4.21.5 0.678
4ne0 ZZUHydroxylase / 0.673
1c1u BAIProthrombin 3.4.21.5 0.670
4joo 1M4Beta-secretase 1 3.4.23.46 0.667
4jpe 1M7Beta-secretase 1 3.4.23.46 0.665
2viv VG2Urokinase-type plasminogen activator 3.4.21.73 0.660
4djy 0KRBeta-secretase 1 3.4.23.46 0.655
4dju 0KKBeta-secretase 1 3.4.23.46 0.652
4djx 0KQBeta-secretase 1 3.4.23.46 0.652
2zp0 PI0Coagulation factor VII 3.4.21.21 0.650