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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sqi 869 4-hydroxyphenylpyruvate dioxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sqi 8694-hydroxyphenylpyruvate dioxygenase / 1.063
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
3rzp PRFNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.744
3uxv GUNNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4iok ADPFormate--tetrahydrofolate ligase / 0.744
1tfz 8694-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.740
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.660
1wet GUNHTH-type transcriptional repressor PurR / 0.660
2bri ANPUridylate kinase 2.7.4.22 0.660
2jey HLOAcetylcholinesterase 3.1.1.7 0.660
2puf GUNHTH-type transcriptional repressor PurR / 0.660
2xi3 GTPGenome polyprotein 2.7.7.48 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.660
4g01 GDPRas-related protein RABF2b / 0.660
4hrq AZGCytidine and deoxycytidylate deaminase zinc-binding region / 0.660
4ldj GDPGTPase KRas / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
5cyp GSPSeptin-9 / 0.658
3tjz GNPADP-ribosylation factor 1 / 0.650