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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sny NAP LD36273p

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1sny NAPLD36273p / 1.289
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.995
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.944
3o26 NDPSalutaridine reductase / 0.922
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.921
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.920
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.917
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.892
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.849
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.848
4j7u NAPSepiapterin reductase 1.1.1.153 0.847
4b79 NADProbable short-chain dehydrogenase / 0.835
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.834
4j7x NAPSepiapterin reductase 1.1.1.153 0.832
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.829
4hwk NAPSepiapterin reductase 1.1.1.153 0.828
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.824
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.823
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.812
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.811
3l77 NJPShort-chain alcohol dehydrogenase / 0.809
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.806
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.806
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.804
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.803
3wds NADNADH-dependent quinuclidinone reductase / 0.802
3p19 NDPPutative blue fluorescent protein / 0.801
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.800
2dte NAIGlucose 1-dehydrogenase related protein / 0.799
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.798
3r3s NADPutative oxidoreductase / 0.798
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.797
3mje NDPAmphB / 0.797
3sju NDPKeto reductase / 0.794
1oaa NAPSepiapterin reductase 1.1.1.153 0.793
1ipe NDPTropinone reductase 2 1.1.1.236 0.792
4u7w NDPMxaA / 0.791
2jah NDPClavaldehyde dehydrogenase / 0.790
3tn7 NJPShort-chain alcohol dehydrogenase / 0.789
4bmv NAPShort-chain dehydrogenase / 0.789
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.788
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.788
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.788
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.786
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.784
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.783
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.782
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.779
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.778
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.777
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.776
1x7g NAPPutative ketoacyl reductase 1.3.1 0.776
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.772
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.772
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.771
2yut NAPPutative short-chain oxidoreductase / 0.771
3s55 NADPutative short-chain dehydrogenase/reductase / 0.770
3sx2 NADUncharacterized protein / 0.770
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.768
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.768
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.768
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.767
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.766
1pr9 NAPL-xylulose reductase 1.1.1.10 0.764
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.763
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.763
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.762
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.761
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.761
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.761
3ak4 NADNADH-dependent quinuclidinone reductase / 0.761
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.761
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.757
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.755
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.755
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.755
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.755
2wdz NADGalactitol dehydrogenase / 0.753
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.753
4hxy NDPPlm1 / 0.753
5jyd NADShort chain dehydrogenase / 0.753
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.752
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.752
2wsb NADGalactitol dehydrogenase / 0.751
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.751
4dbz NDPPutative ketoacyl reductase 1.3.1 0.751
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.750
2p5y NADUDP-glucose 4-epimerase / 0.748
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.748
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.748
1ae1 NAPTropinone reductase 1 / 0.744
1x7h NDPPutative ketoacyl reductase 1.3.1 0.744
2bfo NDPPteridine reductase 1 1.5.1.33 0.744
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.743
3uce NDPDehydrogenase / 0.743
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.741
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.741
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.740
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.740
3tsc NADUncharacterized protein / 0.740
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.740
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.739
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.739
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.737
2bd0 NAPSepiapterin reductase / 0.737
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.736
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.736
4kwh NAPReductase homolog / 0.736
3d3w NAPL-xylulose reductase 1.1.1.10 0.734
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.734
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.734
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.733
4qec NAPElxO / 0.733
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.732
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.731
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.730
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.729
3geg NADShort-chain dehydrogenase/reductase SDR / 0.727
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.727
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.727
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.727
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.726
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.725
4clo NAPPteridine reductase / 0.725
1rpn NDPGDP-mannose 4,6-dehydratase / 0.724
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.724
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.722
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.721
3f1k NAPUncharacterized oxidoreductase YciK 1 0.719
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.718
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.718
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.717
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
1orr NADCDP-paratose 2-epimerase / 0.716
2c29 NAPDihydroflavonol 4-reductase / 0.716
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.713
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.713
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.712
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.712
1sby NADAlcohol dehydrogenase 1.1.1.1 0.711
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.711
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.711
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.710
3h4v NAPPteridine reductase 1 1.5.1.33 0.710
4fn4 NADShort chain dehydrogenase / 0.710
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.708
1zem NADXylitol dehydrogenase / 0.707
5jla NADPutative short-chain dehydrogenase/reductase / 0.707
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.706
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.706
4wec NADShort chain dehydrogenase / 0.706
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.705
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.704
2yy7 NADL-threonine dehydrogenase / 0.704
3tox NAPPutative oxidoreductase / 0.702
4yag NAIC alpha-dehydrogenase / 0.702
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.701
3icp NADNAD-dependent epimerase/dehydratase / 0.701
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.701
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.700
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.699
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.699
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.698
3aw9 NADNAD-dependent epimerase/dehydratase / 0.698
1xkq NDPUncharacterized protein / 0.697
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.697
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.696
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.693
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.693
4qed NAPElxO / 0.693
4yai NAIC alpha-dehydrogenase / 0.693
5lc1 NADL-threonine 3-dehydrogenase / 0.693
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.692
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.691
3ai2 NDPNADPH-sorbose reductase / 0.691
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.691
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.691
1hdo NAPFlavin reductase (NADPH) / 0.690
3ko8 NADNAD-dependent epimerase/dehydratase / 0.690
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.688
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.688
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.688
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.687
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.687
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.687
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.686
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.685
3bmo NAPPteridine reductase / 0.684
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.683
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.682
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.681
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.680
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.680
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.679
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
2nq8 ZIDEnoyl-ACP reductase / 0.678
3ai3 NDPNADPH-sorbose reductase / 0.678
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
2c20 NADUDP-glucose 4-epimerase / 0.677
1i3l NADUDP-glucose 4-epimerase / 0.676
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.676
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.676
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.676
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.676
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.672
2p5u NADUDP-glucose 4-epimerase / 0.672
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.671
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.671
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.670
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.669
3ajr NADNDP-sugar epimerase / 0.669
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.669
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.668
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.668
1bvr NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.666
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.665
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.663
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.663
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.663
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.663
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.662
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.662
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.661
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.661
4imp NDPPolyketide synthase extender modules 3-4 / 0.661
4idg NADPutative UDP-glucose 4-epimerase / 0.660
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.658
1vrw NAIEnoyl-ACP reductase / 0.658
4ccq NAPThioredoxin reductase / 0.658
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.657
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.657
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.656
3orf NADDihydropteridine reductase 1.5.1.34 0.655
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.654
4a5l NDPThioredoxin reductase / 0.654
4e5m NAPPhosphonate dehydrogenase 1.20.1.1 0.652
1e7q NAPGDP-L-fucose synthase / 0.651
2z95 NDPGDP-mannose 4,6-dehydratase / 0.651
1o9b NAIQuinate/shikimate dehydrogenase / 0.650
3gwf NAPCyclohexanone monooxygenase / 0.650