Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
1sln | INH | Stromelysin-1 | 3.4.24.17 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
1sln | INH | Stromelysin-1 | 3.4.24.17 | 1.037 | |
2oy2 | ILE_ALA_GLY | Neutrophil collagenase | 3.4.24.34 | 0.677 | |
3ljg | EEF | Macrophage metalloelastase | 3.4.24.65 | 0.669 | |
1hv5 | RXP | Stromelysin-3 | 3.4.24 | 0.665 | |
2srt | INH | Stromelysin-1 | 3.4.24.17 | 0.661 | |
1jk3 | BAT | Macrophage metalloelastase | 3.4.24.65 | 0.657 | |
3tsk | QEG | Macrophage metalloelastase | 3.4.24.65 | 0.650 |