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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sb9 UPG WbpP

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sb9 UPGWbpP / 1.292
3lu1 UD2UDP-N-acetylglucosamine 4-epimerase / 0.892
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.799
1sb8 UD2WbpP / 0.794
3ruh UD6UDP-N-acetylglucosamine 4-epimerase / 0.727
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 0.678
1t2a GDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.678
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.671
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.665
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.661
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.658
1foa UD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 0.657
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.657
1dlj UGAUDP-glucose 6-dehydrogenase / 0.656
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.654
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.651