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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sb1 165 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sb1 165Prothrombin 3.4.21.5 1.040
4baq M4ZProthrombin 3.4.21.5 0.701
3dux 64UProthrombin 3.4.21.5 0.697
4e7r 0NWProthrombin 3.4.21.5 0.686
4bak M67Prothrombin 3.4.21.5 0.674
2zg0 50UProthrombin 3.4.21.5 0.669
4ax9 N5NProthrombin 3.4.21.5 0.666
1nt1 T76Prothrombin 3.4.21.5 0.661
4ayv 9MQProthrombin 3.4.21.5 0.661
4ban M6SProthrombin 3.4.21.5 0.660
1t4v 14AProthrombin 3.4.21.5 0.654
1nzq 162Prothrombin 3.4.21.5 0.651
1k22 MELProthrombin 3.4.21.5 0.650