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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1s9q OHT Estrogen-related receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1s9q OHTEstrogen-related receptor gamma / 1.331
2gpu OHTEstrogen-related receptor gamma / 0.965
2ewp TXFEstrogen-related receptor gamma / 0.947
2p7z OHTEstrogen-related receptor gamma / 0.896
2gpv OHTEstrogen-related receptor gamma / 0.882
2fsz OHTEstrogen receptor beta / 0.836
2bj4 OHTEstrogen receptor / 0.753
3ert OHTEstrogen receptor / 0.747
1s9p DESEstrogen-related receptor gamma / 0.692
4iu7 1GMEstrogen receptor / 0.687
1xp9 AIJEstrogen receptor / 0.682
1uom PTIEstrogen receptor / 0.672
2jf9 OHTEstrogen receptor / 0.672
1xp1 AIHEstrogen receptor / 0.665
1err RALEstrogen receptor / 0.664
4e5f 0N7Polymerase acidic protein / 0.663
1x7e 244Estrogen receptor / 0.662
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
2j7x ESTEstrogen receptor beta / 0.659
3gcp SB2Mitogen-activated protein kinase 14 / 0.653
1tz8 DESTransthyretin / 0.652
4ivw 1GJEstrogen receptor / 0.652
1qkn RALEstrogen receptor beta / 0.651
1yim CM4Estrogen receptor / 0.651