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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1s0x C3S Nuclear receptor ROR-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1s0x C3SNuclear receptor ROR-alpha / 1.392
1n83 CLRNuclear receptor ROR-alpha / 1.044
3l0l HC3Nuclear receptor ROR-gamma / 0.805
1zhy CLROxysterol-binding protein homolog 4 / 0.698
2ocf ESTEstrogen receptor / 0.694
4ia2 BIVVitamin D3 receptor A / 0.682
1rkg VD1Vitamin D3 receptor / 0.679
2bjf DXCCholoylglycine hydrolase 3.5.1.24 0.678
4bqu CLRJapanin / 0.667
2hbh XE4Vitamin D3 receptor A / 0.662
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.661
1ie9 VDXVitamin D3 receptor / 0.657
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.655
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.653