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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1s0j MUS Trans-sialidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1s0j MUSTrans-sialidase / 1.103
3cl2 G39Neuraminidase / 0.726
2hu4 G39Neuraminidase / 0.706
3zku HCVIsopenicillin N synthase 1.21.3.1 0.684
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.679
4ie0 PD2Alpha-ketoglutarate-dependent dioxygenase FTO / 0.656