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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rxj BNI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rxj BNIStreptavidin / 1.067
4gd9 BTNStreptavidin / 0.917
2zsc BTNTamavidin2 / 0.909
1swg BTNStreptavidin / 0.901
1luq BTNStreptavidin / 0.900
1swe BTNStreptavidin / 0.899
3wyq BTNStreptavidin / 0.898
1mk5 BTNStreptavidin / 0.896
2izi BTNStreptavidin / 0.894
4gda BTNStreptavidin / 0.893
3ry2 BTNStreptavidin / 0.892
2y3f BTNStreptavidin / 0.891
2izh BTNStreptavidin / 0.887
2izf BTNStreptavidin / 0.886
3wyp BSOStreptavidin / 0.886
4yvb BTNStreptavidin / 0.882
1df8 BTNStreptavidin / 0.881
2rtg BTNStreptavidin / 0.876
2rtf BTNStreptavidin / 0.875
4z28 BTNHoefavidin / 0.875
2izj BTNStreptavidin / 0.874
1i9h BNIStreptavidin / 0.870
4dne DTBStreptavidin / 0.861
1nqm BTNStreptavidin / 0.860
2rtd BTNStreptavidin / 0.860
2rte BTNStreptavidin / 0.857
3wzn BTNStreptavidin / 0.856
1n43 BTNStreptavidin / 0.853
1mep BTNStreptavidin / 0.852
1ndj BTNStreptavidin / 0.848
1lcw SHMStreptavidin / 0.847
1stp BTNStreptavidin / 0.837
4bx7 B4FStreptavidin / 0.834
2izg BTNStreptavidin / 0.831
1rxh BNIStreptavidin / 0.825
3rdo BTNStreptavidin / 0.821
1lcz BH7Streptavidin / 0.819
2rtm IMIStreptavidin / 0.818
3t2w BTNAvidin/streptavidin / 0.814
1swd BTNStreptavidin / 0.807
1swt BTNStreptavidin / 0.797
2c4i BTNAvidin / 0.795
2uyw BTNAvd protein / 0.794
3rdq DTBStreptavidin / 0.793
1swr BTNStreptavidin / 0.786
1swn BTNStreptavidin / 0.779
1swp BTQStreptavidin / 0.775
2rtq IMIStreptavidin / 0.765
2rtr IMIStreptavidin / 0.765
3ew2 BTNHypothetical conserved protein / 0.764
1swp BTNStreptavidin / 0.763
2rtl IMIStreptavidin / 0.762
2fhn BNIAvidin-related protein 4/5 / 0.761
2izl IMIStreptavidin / 0.757
1n9m BTNStreptavidin / 0.746
2fhl BNIAvidin-related protein 4/5 / 0.746
1y52 BTNAvidin-related protein 4/5 / 0.743
4bcs BTNAvidin-related protein 4/5 / 0.730
4bj8 BTNAvidin / 0.706
1ldq SHMAvidin / 0.662
1nc9 IMIStreptavidin / 0.659
1sre HABStreptavidin / 0.656