sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1ruo | CMP | cAMP-activated global transcriptional regulator CRP |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1ruo | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.916 | |
| 1zrd | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.751 | |
| 1cgp | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.745 | |
| 2gzw | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.715 | |
| 4i01 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.693 | |
| 3kcc | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.688 | |
| 4ft8 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.680 | |
| 4i02 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.679 | |
| 4i09 | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.678 | |
| 3ryr | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.673 | |
| 3n4m | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.670 | |
| 4i0b | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.669 | |
| 1ne4 | RP1 | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.664 | |
| 4i0a | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.664 | |
| 5c6c | CMP | cGMP-dependent protein kinase 2 | 2.7.11.12 | 0.664 | |
| 3rou | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.663 | |
| 5ahw | CMP | Universal stress protein family protein, putative | / | 0.663 | |
| 1zrc | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.659 | |
| 3rpq | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.659 | |
| 3ryp | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.659 | |
| 4hbn | CMP | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | / | 0.658 | |
| 4hzf | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.657 | |
| 1g6n | CMP | cAMP-activated global transcriptional regulator CRP | / | 0.656 | |
| 1rgs | CMP | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.656 | |
| 1vp6 | CMP | Cyclic nucleotide-gated potassium channel mll3241 | / | 0.656 | |
| 3cl1 | PCG | Cyclic nucleotide-gated potassium channel mll3241 | / | 0.656 | |
| 2oz6 | CMP | Cyclic AMP receptor-like protein | / | 0.655 | |
| 2egv | SAM | Ribosomal RNA small subunit methyltransferase E | 2.1.1.193 | 0.653 | |
| 2ejz | SAH | Diphthine synthase | / | 0.653 | |
| 1rl3 | PCG | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.652 | |
| 2hma | SAM | tRNA-specific 2-thiouridylase MnmA | / | 0.652 | |
| 2ptm | CMP | Hyperpolarization-activated (Ih) channel | / | 0.652 | |
| 3plq | RP2 | cAMP-dependent protein kinase type I-alpha regulatory subunit | / | 0.652 | |
| 1kor | ANP | Argininosuccinate synthase | / | 0.651 | |
| 3ogj | CMP | cGMP-dependent protein kinase 1 | 2.7.11.12 | 0.651 | |
| 4x3l | MTA | RNA 2'-O ribose methyltransferase | / | 0.651 | |
| 1kh3 | ANP | Argininosuccinate synthase | / | 0.650 |