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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rq1 FAD Endoplasmic oxidoreductin-1 1.8.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 1.244
3m31 FADEndoplasmic oxidoreductin-1 1.8.4 1.060
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.875
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.758
3ust FADAcMNPV orf92 / 0.726
3qzy FADFAD-linked sulfhydryl oxidase / 0.703
5ahk FADAcetolactate synthase II, large subunit / 0.699
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.687
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.684
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.683
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.682
3ept FDAPutative FAD-monooxygenase / 0.677
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.677
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.675
5br7 FADUDP-galactopyranose mutase / 0.675
3ish FADThioredoxin reductase 1.8.1.9 0.673
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.671
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.670
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.665
2z6c FMNPhototropin-1 2.7.11.1 0.664
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.660
4kuk RBFPutative blue-light photoreceptor / 0.660
3fmw FADOxygenase / 0.659
4opc FDAConserved Archaeal protein / 0.659
4opd FDAConserved Archaeal protein / 0.659
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.658
1cf3 FADGlucose oxidase 1.1.3.4 0.657
2zbw FADFerredoxin--NADP reductase / 0.657
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.656
4wct FADFructosyl amine:oxygen oxidoreductase / 0.656
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.655
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.655
2q0k FADThioredoxin reductase 1.8.1.9 0.654
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.651
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.651
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.650