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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rml NTS Fibroblast growth factor 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rml NTSFibroblast growth factor 1 / 0.750
1drt PCVClavaminate synthase 1 1.14.11.21 0.660
1g6o ADPCag alpha / 0.660
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.660
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.660
1y56 ATPUncharacterized protein / 0.660
2gr0 ADPFerredoxin reductase / 0.660
2hs4 ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2hv7 ADPSerine/threonine-protein phosphatase 2A activator 5.2.1.8 0.660
2xi3 GTPGenome polyprotein 2.7.7.48 0.660
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.660
3cwq ADPParA family chromosome partitioning protein / 0.660
3gz3 ORODihydroorotate dehydrogenase (fumarate) / 0.660
3kjg ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.660
3sop GDPNeuronal-specific septin-3 / 0.660
3wwm ADP[LysW]-aminoadipate kinase / 0.660
4a8m ATPRNA-directed RNA polymerase 2.7.7.48 0.660
4nau AGSPhosphopantetheine adenylyltransferase / 0.660
4yqf GDPSeptin-9 / 0.660
5cyp GSPSeptin-9 / 0.660
4uxj TTPThymidine kinase / 0.653