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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rkd ADP Ribokinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rkd ADPRibokinase / 0.887
1gqt ACPRibokinase / 0.749
3ump ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.672
2ab8 ACPAdenosine kinase 2.7.1.20 0.666
2dcn ADP2-keto-3-deoxy-gluconate kinase / 0.666
3uqd ADPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.664
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.657