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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rjk VDZ Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rjk VDZVitamin D3 receptor / 1.486
2o4j VD4Vitamin D3 receptor / 1.371
1rkg VD1Vitamin D3 receptor / 1.196
3vtc TK3Vitamin D3 receptor / 1.102
1rkh VD2Vitamin D3 receptor / 1.080
3vtb TKAVitamin D3 receptor / 1.071
1rk3 VDXVitamin D3 receptor / 1.064
4ruj VDXVitamin D3 receptor A / 1.060
2har OCCVitamin D3 receptor / 1.047
2zlc VDXVitamin D3 receptor / 1.036
2hbh XE4Vitamin D3 receptor A / 1.016
4ruo BIVVitamin D3 receptor A / 1.015
3m7r VDXVitamin D3 receptor / 1.004
3vt3 VDXVitamin D3 receptor / 0.997
3vtd TKDVitamin D3 receptor / 0.994
1ie9 VDXVitamin D3 receptor / 0.988
3vt7 VDXVitamin D3 receptor / 0.983
4itf TFYVitamin D3 receptor / 0.982
2hb7 O1CVitamin D3 receptor / 0.976
4ia1 BIVVitamin D3 receptor A / 0.974
3kpz ZNEVitamin D3 receptor / 0.970
2has C3OVitamin D3 receptor / 0.967
1s19 MC9Vitamin D3 receptor / 0.966
1ie8 KH1Vitamin D3 receptor / 0.957
1txi TX5Vitamin D3 receptor / 0.955
3vru YS3Vitamin D3 receptor / 0.944
4ia3 BIVVitamin D3 receptor A / 0.943
1db1 VDXVitamin D3 receptor / 0.936
1s0z EB1Vitamin D3 receptor / 0.935
3a78 3EVVitamin D3 receptor / 0.923
4ia2 BIVVitamin D3 receptor A / 0.920
2ham C33Vitamin D3 receptor / 0.903
3vt6 5YIVitamin D3 receptor / 0.887
2hb8 MVDVitamin D3 receptor / 0.883
2hc4 VDXVitamin D3 receptor A / 0.881
3vrt YS2Vitamin D3 receptor / 0.863
4g2i 0VQVitamin D3 receptor / 0.833
2hcd BIVVitamin D3 receptor A / 0.829
2zl9 VDAVitamin D3 receptor / 0.826
3vt8 YI3Vitamin D3 receptor / 0.812
4ite TEYVitamin D3 receptor / 0.810
3vt5 YI2Vitamin D3 receptor / 0.795
4g2h 0VQVitamin D3 receptor A / 0.791
3vrw YS5Vitamin D3 receptor / 0.774
3w0j T08Vitamin D3 receptor / 0.767
2o4r VD5Vitamin D3 receptor / 0.754
3vrv YSDVitamin D3 receptor / 0.752
4rup H97Vitamin D3 receptor A / 0.745
3dr1 C5DVitamin D3 receptor A / 0.729
3vt9 YI4Vitamin D3 receptor / 0.703
4ia7 BIVVitamin D3 receptor A / 0.663
3w0i O11Vitamin D3 receptor / 0.653
4g1y 0VOVitamin D3 receptor A / 0.652