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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rg9 SAM S-adenosylmethionine synthase 2.5.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rg9 SAMS-adenosylmethionine synthase 2.5.1.6 1.155
4ndn SAMS-adenosylmethionine synthase isoform type-2 2.5.1.6 0.792
4ktt SAMS-adenosylmethionine synthase isoform type-2 2.5.1.6 0.762
4k0b SAMS-adenosylmethionine synthase / 0.756
4l2z S7MS-adenosylmethionine synthase / 0.717
3qj5 022Alcohol dehydrogenase class-3 1.1.1.1 0.651