scPDB - Distribution of Binding mode Similarity values of 1rfq entry / Site 2

Distribution of Interaction pattern similarity measured by Grim

You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1rfq	LAR	Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
1rfq	LAR	Actin, alpha skeletal muscle	/	0.947
4h0y	LAR	Actin, alpha skeletal muscle	/	0.673
4e5l	DBH	Polymerase acidic protein	/	0.665
1ijj	LAR	Actin, alpha skeletal muscle	/	0.651
2q0u	LAB	Actin, alpha skeletal muscle	/	0.650