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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rek B8L cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.485
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.978
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.797
1bx6 BA1cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.766
1xh9 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.758
1xha R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.720
3oog YTPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.700
3q3b 55EGlycogen synthase kinase-3 beta 2.7.11.26 0.698
1xh7 R96cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
1xh4 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.686
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.669
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
2uzw SS4cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
2obj VRVSerine/threonine-protein kinase pim-1 2.7.11.1 0.666
1ydr IQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.662
1svg I04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
2uzu L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
1ydt IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
3ma3 01ISerine/threonine-protein kinase pim-1 2.7.11.1 0.654
3qzf X66Cyclin-dependent kinase 2 2.7.11.22 0.653
2jds L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
3f88 3HTGlycogen synthase kinase-3 beta 2.7.11.26 0.652
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
1q8u H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650