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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rc1 KT3 Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rc1 KT3Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.323
1rbq KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.257
1njs KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.223
1rby KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.167
1rc0 KT5Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.164
1rbm KT5Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.128
1rbz KT5Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.101
4ew2 DXYTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.857
4ew3 DXZTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.825
3dds 26BGlycogen phosphorylase, liver form 2.4.1.1 0.672
1c3e NHRPhosphoribosylglycinamide formyltransferase / 0.663
1gar U89Phosphoribosylglycinamide formyltransferase / 0.657
1dra MTXDihydrofolate reductase 1.5.1.3 0.653
4bzb DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.653
4isu IKMGlutamate receptor 2 / 0.653