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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1r6a SAH Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1r6a SAHGenome polyprotein 2.7.7.48 0.881
1l9k SAHGenome polyprotein 2.7.7.48 0.831
3evg SAHGenome polyprotein 2.1.1.56 0.807
2px5 SAHGenome polyprotein 2.7.7.48 0.788
3evc SAHGenome polyprotein 2.1.1.56 0.784
3p8z SAHGenome polyprotein 2.1.1.56 0.770
3eva SAHGenome polyprotein 2.1.1.56 0.768
2p41 SAHGenome polyprotein / 0.760
3p97 SAMGenome polyprotein 2.1.1.56 0.760
2wa2 SAMGenome polyprotein / 0.756
3eld SFGMethyltransferase / 0.754
3ely SAHMethyltransferase / 0.751
2p3q SAHGenome polyprotein / 0.749
2pxa SAHGenome polyprotein 2.7.7.48 0.748
2p1d SAHGenome polyprotein 2.7.7.48 0.747
3evb SAHGenome polyprotein 2.1.1.56 0.747
5jjr SAHGenome polyprotein / 0.747
5dto SAHGenome polyprotein / 0.746
3elu SAMMethyltransferase / 0.745
2px2 SAHGenome polyprotein 2.7.7.48 0.743
4ctk SAMGenome polyprotein / 0.738
4ctj SAMGenome polyprotein / 0.735
4k6m SAHGenome polyprotein / 0.732
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.723
5k7w SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.716
3p8z 36AGenome polyprotein 2.1.1.56 0.714
1yf3 SAHDNA adenine methylase / 0.710
5il1 SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.710
3lkz SFGGenome polyprotein / 0.707
5k7u SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.706
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.705
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.698
1nw5 SAMModification methylase RsrI 2.1.1.72 0.697
3emd SFGMethyltransferase / 0.696
5jjs SAHGenome polyprotein / 0.691
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.689
10mh SAHModification methylase HhaI 2.1.1.37 0.686
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.684
2g1p SAHDNA adenine methylase 2.1.1.72 0.680
3tos SAHCalS11 / 0.678
3c3y SAHO-methyltransferase / 0.669
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.668
2oxt SAMGenome polyprotein / 0.666
4x7y SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.666
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.664
3vyw SAMUncharacterized protein / 0.663
4uck SAMLarge structural protein / 0.657
2plw SAMRibosomal RNA methyltransferase, putative / 0.656
2xbm SAHGenome polyprotein / 0.652