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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1r35 H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.798
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.700
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.700
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.691
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.686
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.683
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.681
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.680
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.680
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.679
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.678
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.677
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.677
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.675
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.675
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.674
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.672
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.672
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.672
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.671
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.669
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.664
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.664
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.664
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.663
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.663
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.662
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.659
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.659
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.659
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.658
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.658
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.657
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.655
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.655
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.655
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.655
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.653