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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qxo FMN Chorismate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qxo FMNChorismate synthase / 1.142
2o12 FMNChorismate synthase / 0.895
2wet FADTryptophan 5-halogenase / 0.674
4z24 FADPutative GMC-type oxidoreductase R135 1 0.672
4q71 FADBifunctional protein PutA / 0.671
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.668
2yg6 FADPutrescine oxidase / 0.666
3bm1 FMNPutative NAD(P)H nitroreductase YdjA / 0.664
2z6c FMNPhototropin-1 2.7.11.1 0.661
5dbj FADFADH2-dependent halogenase PltA / 0.661
2jkc FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.651
4hnb FMNLOV protein / 0.651