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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qx4 FAD NADH-cytochrome b5 reductase 3 1.6.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qx4 FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.290
3w2f NADNADH-cytochrome b5 reductase 3 1.6.2.2 0.790
3w2e NADNADH-cytochrome b5 reductase 3 1.6.2.2 0.758
4fk8 FADFerredoxin--NADP reductase / 0.703
4l82 FMNUncharacterized protein / 0.694
4idp GNPAtlastin-1 3.6.5 0.660
2qdx FADFerredoxin--NADP+ reductase / 0.659
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.658
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.656
1qru ATPGlutamine--tRNA ligase 6.1.1.18 0.655
1wsb FMNFlavodoxin / 0.654
4yl2 FMNLactate oxidase / 0.654
3klb FMNUncharacterized protein / 0.652
2fsn ADPArchaeal actin homolog / 0.651
1xs4 DCPdCTP deaminase / 0.650
2nli FMNLactate oxidase / 0.650