Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qss DG3 DNA polymerase I, thermostable 2.7.7.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qss DG3DNA polymerase I, thermostable 2.7.7.7 1.069
1qtm TTPDNA polymerase I, thermostable 2.7.7.7 0.795
1qsy DDSDNA polymerase I, thermostable 2.7.7.7 0.786
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.748
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.682
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.654