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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qru ATP Glutamine--tRNA ligase 6.1.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qru ATPGlutamine--tRNA ligase 6.1.1.18 0.942
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.855
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.833
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.787
4jxz ATPGlutamine--tRNA ligase 6.1.1.18 0.766
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.735
4jyz ATPGlutamine--tRNA ligase 6.1.1.18 0.727
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.698
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.697
1euy QSIGlutamine--tRNA ligase 6.1.1.18 0.690
1ir3 ANPInsulin receptor 2.7.10.1 0.678
2re8 GSUGlutamine--tRNA ligase 6.1.1.18 0.668
1qx4 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655