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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qrq NDP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 1.382
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.973
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 0.930
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 0.926
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.884
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 0.859
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.823
1lqa NDPProtein tas / 0.819
1ef3 NAPAldose reductase 1.1.1.21 0.739
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.738
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.730
1ah4 NAPAldose reductase 1.1.1.21 0.727
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.711
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.708
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.691
2hdj NDPAldo-keto reductase family 1 member C2 / 0.687
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.686
2j8t NAPAldose reductase 1.1.1.21 0.684
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.682
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.678
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.677
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.676
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.676
2iq0 NAPAldose reductase 1.1.1.21 0.676
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.675
2acq NAPAldose reductase 1.1.1.21 0.669
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.666
2bgs NDPAldose reductase 1.1.1.21 0.663
2pfh NDPAldose reductase 1.1.1.21 0.662
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.662
3h7u NAPNADPH-dependent aldo-keto reductase, chloroplastic / 0.662
3q67 NAPAldose reductase 1.1.1.21 0.662
3h7r NAPAldo-keto reductase family 4 member C8 / 0.659
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.659
2acu NAPAldose reductase 1.1.1.21 0.658
1s1r NAPAldo-keto reductase family 1 member C3 / 0.656
1z8a NAPAldose reductase 1.1.1.21 0.656
4g5d NDPProstaglandin F synthase 1.1.1.188 0.655
1ads NAPAldose reductase 1.1.1.21 0.654
2acs NAPAldose reductase 1.1.1.21 0.651