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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qrp HH0 Pepsin A-4 3.4.23.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qrp HH0Pepsin A-4 3.4.23.1 1.563
1psa 0ZLPepsin A 3.4.23.1 0.868
1ppk IVVPenicillopepsin-1 3.4.23.20 0.854
1gvw 0EMEndothiapepsin 3.4.23.22 0.849
2jjj 0QSEndothiapepsin 3.4.23.22 0.796
1ppl 1Z7Penicillopepsin-1 3.4.23.20 0.794
1bxq PP8Penicillopepsin-1 3.4.23.20 0.786
1ppm 0P1Penicillopepsin-1 3.4.23.20 0.786
3duy AFJBeta-secretase 1 3.4.23.46 0.777
1xe5 5FEPlasmepsin-2 3.4.23.39 0.773
2jji 0QSEndothiapepsin 3.4.23.22 0.771
1od1 0QSEndothiapepsin 3.4.23.22 0.769
1bxo PP7Penicillopepsin-1 3.4.23.20 0.766
1gvv 0GMEndothiapepsin 3.4.23.22 0.760
2g94 ZPQBeta-secretase 1 3.4.23.46 0.748
1gvt 2ZSEndothiapepsin 3.4.23.22 0.737
3dv1 AR9Beta-secretase 1 3.4.23.46 0.718
3k5d XLIBeta-secretase 1 3.4.23.46 0.718
2web PP4Penicillopepsin-1 3.4.23.20 0.705
1rne C60Renin 3.4.23.15 0.698
2g20 L1ARenin 3.4.23.15 0.693
1xe6 5FPPlasmepsin-2 3.4.23.39 0.692
3d91 REMRenin 3.4.23.15 0.692
3dv5 BAVBeta-secretase 1 3.4.23.46 0.692
2p8h MY9Beta-secretase 1 3.4.23.46 0.690
3ixj 586Beta-secretase 1 3.4.23.46 0.687
1dw6 0Q4Gag-Pol polyprotein 3.4.23.16 0.685
1e81 M91Endothiapepsin 3.4.23.22 0.685
1zap A70Candidapepsin-2 3.4.23.24 0.680
2xfk AA9Beta-secretase 1 3.4.23.46 0.672
1w6h TITPlasmepsin-2 3.4.23.39 0.669
1bai 0Q4Gag-Pro polyprotein / 0.666
1bim 0QBRenin 3.4.23.15 0.665
3pww ROCEndothiapepsin 3.4.23.22 0.662
3dm6 757Beta-secretase 1 3.4.23.46 0.661
2vnm CM8Beta-secretase 1 3.4.23.46 0.657
4dh6 0KNBeta-secretase 1 3.4.23.46 0.656
1b11 3TLPol polyprotein / 0.654
1me6 IVSPlasmepsin-2 3.4.23.39 0.654
2vnn CM7Beta-secretase 1 3.4.23.46 0.654