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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qom H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qom H4BNitric oxide synthase, inducible 1.14.13.39 0.775
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.721
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.717
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.710
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.705
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.689
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.678
4blt APCNTPase P4 / 0.665
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.664
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.664
4e5f 0N7Polymerase acidic protein / 0.660
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.660
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.659
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.657
1yum NCNProbable nicotinate-nucleotide adenylyltransferase 2.7.7.18 0.655
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.653
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.653
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.650
4ux6 H4BNitric oxide synthase, inducible 1.14.13.39 0.650