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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qmg APX Ketol-acid reductoisomerase, chloroplastic 1.1.1.86

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qmg APXKetol-acid reductoisomerase, chloroplastic 1.1.1.86 1.422
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.722
3fr8 NDPKetol-acid reductoisomerase, chloroplastic 1.1.1.86 0.688
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.681
1m75 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.680
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.680
3adp NAILambda-crystallin 1.1.1.45 0.673
2j9l ATPH(+)/Cl(-) exchange transporter 5 / 0.668
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.668
5cku NAPL-ornithine N(5)-monooxygenase / 0.665
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.664
1kev NDPNADP-dependent isopropanol dehydrogenase 1.1.1.80 0.663
2dph NADFormaldehyde dismutase / 0.661
1zh8 NAPUncharacterized protein / 0.660
4ww4 ADPRuvB-like helicase / 0.659
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.657
2q46 NAPUncharacterized protein At5g02240 / 0.656
2wow NDPTrypanothione reductase / 0.655
3m2t NADProbable dehydrogenase / 0.654
3tri NAPPyrroline-5-carboxylate reductase / 0.652
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.650
4xb1 NDP319aa long hypothetical homoserine dehydrogenase / 0.650